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Productions de l'unité

PUBLICATIONS

2014

Branchu, P., Matrat, S., Vareille, M., Garrivier, A., Durand, A., Crépin, S., Harel, J., Jubelin, G. & Gobert, A.P.(2014). NsrR, GadE, and GadX interplay in repressing expression of the Escherichia coli O157:H7 LEE pathogenicity island in response to nitric oxide. PLOS Pathogens 10(1), e1003874.

Branco, P., Francisco, D., Chambon, C., Hebraud, M., Arneborg, N., Almeida, M. G., Caldeira, J. & Albergaria, H.(2014). Identification of novel GAPDH-derived antimicrobial peptides secreted by Saccharomyces cerevisiae and involved in wine microbial interactions. Applied Microbiology and Biotechnology 98, 843-853.

Chaucheyras-Durand, F. & Ossa, F. (2014). Review: the rumen microbiome: composition, abundance, diversity, and new investigative tools. Professional Animal Scientist 30, 1-12.

2013

Bertin, Y., F. Chaucheyras-Durand, C. Robbe-Masselot, A. Durand, A. de la Foye, J. Harel, P. S. Cohen, T. Conway, E. Forano and C. Martin (2013). Carbohydrate utilization by enterohaemorrhagic Escherichia coli O157:H7 in bovine intestinal content. Environmental Microbiology 15(2):610-22.

Branchu, P., Hindre, T., Fang, X., Thomas, R., Gomelsky, M., Claret, L., Harel, J., Gobert, A. P. & Martin, C.(2013). The c-di-GMP phosphodiesterase VmpA absent in Escherichia coli K12 strains affects motility and biofilm formation in the enterohemorrhagic O157:H7 serotype. Veterinary immunology and immunopathology 152:132-140.

Chagnot, C., Agus, A., Renier, S., Peyrin, F., Talon, R., Astruc, T. & Desvaux, M.(2013). In vitro colonization of the muscle extracellular matrix components by Escherichia coli O157:H7: The influence of growth medium, temperature and pH on initial adhesion and induction of biofilm formation by collagens I and III. Plos One8, e59386-e59386.

Chagnot, C., Zorgani, M.A., Astruc, T., Desvaux, M. (2013). Proteinaceous determinants of surface colonization in bacteria: bacterial adhesion and biofilm formation from a protein secretion perspective. Frontiers in Microbiology 4(303) :1-26

Crouzet, L., Gaultier, E., Del'homme, C., Cartier, C., Delmas, E., Dapoigny, M., Fioramonti, J. & Bernalier-Donadille, A.(2013). The hypersensitivity to colonic distension of IBS patients can be transferred to rats through their fecal microbiota. Neurogastroenterology and motility : the official journal of the European Gastrointestinal Motility Society 25, e272-282.

De Aguiar, S.C., Zeoula, L.M., Franco, S.L., Peres, L.P., Arcuri, P.B., Forano, E.(2013). Antimicrobial activity of Brazilian propolis extracts against rumen bacteria in vitro. World Journal of Microbiology and Biotechnology 29:1951-1959.

Duniere, L., Sindou, J., Chaucheyras-Durand, F., Chevallier, I. & Thevenot-Sergentet, D.(2013). Silage processing and strategies to prevent persistence of undesirable microorganisms. Animal Feed Science and Technology 182, 1-15.

Faubladier, C., Chaucheyras-Durand, F., da Veiga, L. & Julliand, V.(2013). Effect of transportation on fecal bacterial communities and fermentative activities in horses: Impact of Saccharomyces cerevisiae CNCM I-1077 supplementation. Journal of Animal Science91, 1736-1744.

Forano, E., Chaucheyras-Durand, F., Bertin, Y. & Martin, C.(2013). Portage des Escherichia coli entérohémorragiques par les ruminants et effet de probiotiques. Biologie Aujourd’hui 207(4), 1-7.

Gobert, AP., Verrière, T., De Sablet, T., Peek, RM Jr, Chaturvedi, R., and Wilson KT(2013). Haem oxygenase-1 inhibits phosphorylation of the Helicobacter pylori oncoprotein CagA in gastric epithelial cells. Cellular Microbiology 15(1):145-156

Harrison, E. M., Paterson, G. K., Holden, M. T. G.&Morgan, F.J. E., Larsen, A.R., Petersen, A., Leroy, S., De Vliegher, S., Perreten, V., Fox, L.K., Lam, T.J.G.M., Sampimon, O.C., Zadoks, R.N., Peacock, S.J., Parkhill, J., Holmes, M.A.(2013). A Staphylococcus xylosus isolate with a new mecC allotype. Antimicrobial Agents and Chemotherapy 57:1524-1528.

Jubelin, G., Lanois, A., Severac, D., Rialle, S., Longin, C., Gaudriault, S. & Givaudan, A.(2013). FliZ is a global regulatory protein affecting the expression of flagellar and virulence genes in individual Xenorhabdus nematophila bacterial cells. PLoS genetics 9, e1003915-e1003915.

Laukova, A., Kandricakova, A., Strompfova, V., Chacornac, J. P., Leroy, S. & Zitnan, R.(2013). Staphylococcal species detected in free-living trouts of East Slovakian water sources and their relation to antimicrobials. Bulletin of the Veterinary Institute in Pulawy 57, 167-171.

Martin, C., Mirande, C., Morgavi, D.P., Forano, E., Devillard, E., & Mosoni, P.(2013). Methionine analogues HMB and HMBi increase the abundance of cellulolytic bacterial representatives in the rumen of cattle with no direct effects on fibre degradation. Animal Feed Science and Technology 182:16-24

Renier, S., Chambon, C., Viala, D., Chagnot, C., Hebraud, M. & Desvaux, M.(2013). Exoproteomic analysis of the SecA2-dependent secretion in Listeria monocytogenes EGD-e. Journal of Proteomics 80, 183-195.

Silberberg, M., Chaucheyras-Durand, F., Commun, L., Mialon, M. M., Monteils, V., Mosoni, P., Morgavi, D. P. & Martin, C.(2013). Repeated acidosis challenges and live yeast supplementation shape rumen microbiota and fermentations and modulate inflammatory status in sheep. Animal : an international journal of animal bioscience 7, 1910-1920.

2012

Bros M, Arnaud E, Loiseau G, Talon R & Collignan A. 2012. Feasibility of Coupling Dehydration-Impregnation by Soaking Treatment of Meat with Fermentation by Lactobacillus sakei. Journal of Food Science 77(8):M434-M440.

Chagnot C, Listrat A, Astruc T & Desvaux M. 2012. Bacterial adhesion to animal tissues: protein determinants for recognition of extracellular matrix components. Cellular Microbiology 14(11):1687-1696.

Chassard C, Delmas E, Robert C, Lawson PA, Bernalier-Donadille A. 2012. Ruminococcus champanellensis sp. nov., a cellulose-degrading bacteria from the human gut microbiota. Int J Syst Evol Microbiol., 62: 138-143.

Chassard, C., M. Dapoigny, K. P. Scott, L. Crouzet, C. Del'homme, P. Marquet, J. C. Martin, G. Pickering, D. Ardid, A. Eschalier, C. Dubray, H. J. Flint and A. Bernalier-Donadille (2012). Functional dysbiosis within the gut microbiota of patients with constipated-irritable bowel syndrome. Alimentary Pharmacology & Therapeutics 35(7): 828-838.

Chaturvedi, R., T. de Sablet, L. A. Coburn, A. P. Gobert and K. T. Wilson (2012). Arginine and polyamines in Helicobacter pylori-induced immune dysregulation and gastric carcinogenesis. Amino Acids 42(2-3): 627-640.

Dapoigny M, Piche T, Ducrotte P, Lunaud B, Cardot JM, Bernalier-Donadille A. 2012. Efficacy and safety profile of LCR35 complete freeze-dried culture in irritable bowel syndrome: a randomized, double-blind study.. World Journal of Gastroenterology, 18(17): 2067-2075.

Desvaux M. 2012. Contribution of holins to protein trafficking: secretion, leakage or lysis? Trends Microbiol. 20:259-261.

Flint H, Scott KP, Duncan SH, Louis P, Forano E. 2012. Microbial degradation of complex carbohydrates in the gut. Gut Microbes. In press.

Gagen E, Mosoni P, Denman S, Al Jassim R, McSweeney C, Forano E. 2012. Methanogen colonisation does not significantly alter acetogen diversity in lambs isolated 17h after birth and raised aseptically. Microbial Ecology 64(3): 628-640.

Gobert, A. P. and K. T. Wilson (2012). Editorial: Orchestration of macrophage polarization by polyamines. Journal of leukocyte biology 91(5): 677-9.

Meziani S, Nadaud I, Gaillard-Martinie B, Chambon C, Benali M & Branlard G. 2012. Proteomic analysis of the mature kernel aleurone layer in common and durum wheat. Journal of Cereal Science 55(3): 323-330.

Renier S, Micheau P, Talon R, Hebraud M & Desvaux M. 2012. Subcellular Localization of Extracytoplasmic Proteins in Monoderm Bacteria: Rational Secretomics-Based Strategy for Genomic and Proteomic Analyses. Plos One 7(8).

2011

Bendali, F., A. Durand, M. Hebraud and D. Sadoun (2011). Lactobacillus paracasei subsp paracasei: an Algerian isolate with antibacterial activity against enteric pathogens and probiotic fitness. Journal of Food and Nutrition Research 50(3): 139-149.

Bertin, Y., J. P. Girardeau, F. Chaucheyras-Durand, B. Lyan, E. Pujos-Guillot, J. Harel and C. Martin (2011). Enterohaemorrhagic Escherichia coli gains a competitive advantage by using ethanolamine as a nitrogen source in the bovine intestinal content. Environmental Microbiology 13(2): 365-377 (IF 4.909)

Chaturvedi R, Asim M, Romero-Gallo J, Barry DP, Hoge S, de Sablet T, Delgado AG, Wroblewski LE, Piazuelo MB, Yan F, Israel DI, Casero RA Jr, Correa P, Gobert AP, Polk DB, Peek RM Jr and Wilson KT.2011. Spermine oxidase mediates the gastric cancer risk associated with Helicobacter pylori CagA. Gastroenterology, 141 (5), 1696-1708. (IF: 12.591).

Dunière L, Gleizal A, Chaucheyras Durand F, Chevallier I, Thévenot-Sergentet D. 2011. Fate of Escherichia coli O26 in corn silage experimentally contaminated at ensiling, at silo opening, or after aerobic exposure, and protective effect of various bacterial inoculants. Applied and Environmental Microbiology, 77(24): 8696-8704.

Gobert AP, Asim M, Piazuelo MB, Verriere T, Scull BP, de Sablet T, Glumac A, Lewis ND, Correa P, Peek RM Jr, Chaturvedi R and Wilson KT.2011. Disruption of nitric oxide signaling by Helicobacter pylori results in enhanced inflammation by inhibition of heme oxygenase-1. J. Immunol.,187:5370-5379. (IF: 6.000).

Graveline, R., M. Mourez, M. A. Hancock, C. Martin, S. Boisclair and J. Harel (2011). Lrp-DNA complex stability determines the level of ON cells in type P fimbriae phase variation. Molecular Microbiology 81(5): 1286-1299.

Kajak-Siemaszko, K., L. Aubry, F. Peyrin, M. L. Bax, P. Gatellier, T. Astruc, W. Przybylski, D. Jaworska, B. Gaillard-Martinie and V. Sante-Lhoutellier (2011). Characterization of protein aggregates following a heating and freezing process. Food Research International 44(10): 3160-3166.

Lewis ND, Asim M, Barry DP, de Sablet T, Singh K, Piazuelo MB, Gobert AP, Chaturvedi R and Wilson KT. 2011. Immune evasion by Helicobacter pylori is mediated by induction of macrophage arginase II. J. Immunol., 186 (6): 3632-3641. FI: 6.000.

Mosoni P, Martin C, Forano E, Morgavi D. 2011. Long-term defaunation increases the abundance of cellulolytic ruminococci and methanogens but does not affect the bacterial and methanogen diversity in the rumen of sheep. J. Anim Sci. J. Anim Sci. 89:783-791

Renier S, Hébraud M, Desvaux M. 2011. Molecular biology of surface colonization by Listeria monocytogenes: an additional facet of an opportunistic Gram-positive foodborne pathogen. Environ Microbiol. 13(4):835-50.

Rossiter AE, Browning DF, Leyton DL, Johnson MD, Godfrey RE, Wardius CA, Desvaux M, Cunningham AF, Ruiz-Perez F, Nataro JP, Busby SJ, Henderson IR. 2011. Transcription of the plasmid-encoded toxin gene from enteroaggregative Escherichia coli is regulated by a novel co-activation mechanism involving CRP and Fis. Mol Microbiol. 81(1):179-91.

Talon R, Leroy S. 2011. Diversity and safety hasards of bacteria involved in meat fermentations. Meat Science. 89, 303-309; [IF 2.619].

2010

Asim M, Chaturvedi R, Lewis ND, Barry DP, Singh K, de Sablet T, Gobert AP and Wilson KT. 2010. Helicobacter pylori induces ERK-dependent formation of a phospho-c-Fos/c-Jun AP-1 complex that causes apoptosis in macrophages. Journal of Biological Chemistry, 285(26):20343-20357. (IF 5.328)

Chassard C, Delmas E, Robert C, Bernalier-Donadille A. 2010. The cellulose-degrading microbial community of the human gut varies according to the presence or absence of methanogens. FEMS Microbiology Ecology. 74(1):205-213. (IF 3.335)

Chaturvedi R, Asim M. Hoge S, Lewis ND, Singh K, Barry DP, de Sablet T, Piazuelo MB, Sarvaria AR, Cheng Y, Closs EI, Casero RA Jr, Gobert AP and Wilson KT. 2010. Polyamines impair immunity to Helicobacter pylori by inhibiting l-arginine uptake required for nitric oxide production. Gastroenterology. 139(5):1686-1698.e6. (IF 12.59)

Chaucheyras-Durand, F., Durand, H. 2010. Probiotics in animal nutrition and health. Beneficial Microbes 1(1): 3-9.

Chaucheyras-Durand F, Faqir F, Ameilbonne A, Rozand C and Martin C. 2010. Fates of acid-resistant and non-acid-resistant shiga toxin-producing Escherichia coli strains in ruminant digestive contents in the absence and presence of probiotics. Applied and Environmental Microbiology. 76(3):640-647. (IF 3.686)

Chaucheyras-Durand F, Masseglia S, Fonty G, Forano E. 2010. Influence of the composition of the cellulolytic flora on the development of hydrogenotrophic microorganisms, hydrogen utilisation and methane production in the rumen of gnotobiotically-reared lambs. Applied and Environmental Microbiology. 76(24):7931-7937. (IF 3.801)

Coton E, Desmonts MH, Leroy S, Coton M, Jamet E, Christieans S, Donnio PY, Lebert I, Talon R. 2010. Biodiversity of coagulase-negative Staphylococci in French cheeses, dry fermented sausages, processing environments and clinical samples. International Journal of Food Microbiology. 137(2-3):221-229. (IF 3.011).

Crossman LC, Chaudhuri RR, Beatson SA, Wells TJ, Desvaux M, Cunningham AF, Petty NK, Mahon V, Brinkley C, Hobman JL, Savarino SJ, Turner SM, Pallen MJ, Penn CW, Parkhill J, Turner AK, Johnson TJ, Thomson NR, Smith SG, Henderson IR. 2010. A commensal gone bad: complete genome sequence of the prototypical enterotoxigenic Escherichia coli strain H10407. Journal of Bacteriology. 192:5822-5831 (IF 2009 3.940).

Desvaux M, Dumas E, Chafsey I, Chambon C and Hébraud M. 2010. Comprehensive appraisal of the extracellular proteins from a monoderm bacterium: Theoretical and empirical exoproteomes of Listeria monocytogenes EGD-e by secretomics. Journal of Proteome Research. 9(10):5076-5092. (IF 2009 5.132)

Dubois D, Leyssene D, Chacornac JP, Kostrzewa M, Schmit PO, Talon R, Bonnet R, Delmas J. 2010. Identification of a variety of Staphylococcus species by matrix-assisted laser desorption ionization-time of flight mass spectrometry. Journal of Clinical Microbiology. 48(3):941-945. (IF 4.162)

Even S, Leroy S, Charlier C, Zakour NB, Chacornac J-P, Lebert I, Jamet E, Desmonts M-H, Coton E, Pochet S, Donnio P-Y, Gautier M, Talon R, Le Loir Y. 2010. Low occurrence of safety hazards in coagulase negative staphylococci isolated from fermented foodstuffs. International Journal of Food Microbiology. 139(1-2):87-95. (IF 3.011)

Fadda S, Anglade P, Baraige F, Zagorec M, Talon R, Vignolo G, Champomier-Vergès M-C. 2010. Adaptive response of Lactobacillus sakei 23K during growth in the presence of meat extracts: A proteomic approach. International Journal of Food Microbiology. 142(1-2):36-43. (IF 3.011)

Froeder Arcuri E, Fonseca Angelo F, Fonseca Martins Guimaraes M, Talon R, De Fatima Borges M, Leroy S, Loiseau G, Lange CC, De Andrade NJ, Montet D 2010. Toxigenic status of Staphylococcus aureus isolated from bovine raw milk and minas frescal cheese in Brazil. Journal of Food Protection. 73(12):2225–2231 (IF 2009 1.960)

Latorre-Moratalla ML, Bover-Cid S, Talon R, Garriga M, Zanardi E, Ianieri A, Fraqueza MJ, Elias M, Drosinos EH, Vidal-Carou MC. 2010. Strategies to reduce biogenic amine accumulation in traditional sausage manufacturing. LWT-Food Science and Technology. 43(1):20-25. (IF 2.114)

Latorre-Moratalla ML, Bover-Cid S, Talon R, Aymerich T, Garriga M, Zanardi E, Ianieri A, Fraqueza MJ, Elias M, Drosinos EH, Laukova A, Vidal-Carou MC. 2010. Distribution of aminogenic activity among potential autochthonous starter cultures for dry fermented sausages. Journal of Food Protection. 73(3):524-528. (IF 1.960)

Leroy S, Giammarinaro P, Chacornac J-P, Lebert I, Talon R. 2010. Biodiversity of indigenous staphylococci of naturally fermented dry sausages and manufacturing environments of small-scale processing units. Food Microbiology. 27(2):294-301. (IF 3.216).

Lewis ND, Asim M, Barry DP,Singh K,de Sablet T,Boucher JL, Gobert AP,Chaturvedi R and Wilson KT. 2010. Arginase II restricts host defense to Helicobacter pylori by attenuating inducible nitric oxide synthase translation in macrophages. Journal of Immunology 184(5):2572-2582. (IF 5.646)

Mirande C, Kadlecikova E, Matulova M, Capek P, Bernalier-Donadille A, Forano E, Béra-Maillet C. 2010. Dietary fibre degradation and fermentation by two xylanolytic bacteria Bacteroides xylanisolvens XB1A(T) and Roseburia intestinalis XB6B4 from the human intestine.Journal of Applied Microbiology. 109:451-460. (IF 2.028)

Mirande C, Mosoni P, Béra-Maillet C, Bernalier-Donadille A, Forano E. 2010. Characterization of XYN10A, a highly active xylanase from the human gut bacterium Bacteroides xylanisolvens XB1A. Applied Microbiology and Biotechnology. 87:2097-2105. (IF 2.569)

Morgavi D, Forano E, Martin C, Newbold CJ. 2010. Microbial ecosystem and methanogenesis in ruminants. Animal. 4(7):1024-1036. (IF 0.994)

Renier S, Hébraud M, Desvaux M. 2010. Molecular biology of surface colonization by Listeria monocytogenes: an additional facet of an opportunistic Gram-positive foodborne pathogen.Environmental Microbiology. doi: 10.1111/j.1462-2920.2010.02378.x (IF 2009 4.909)

2009

Béra-Maillet C, Mosoni P, Kwasiborski A, Suau F, Ribot Y, Forano E. 2009. Development of a RT-qPCR method for the quantification of Fibrobacter succinogenes S85 glycoside hydrolase transcripts in the rumen content of gnotobiotic and conventional sheep. Journal of Microbiological Methods. 77(1):8-16. (IF 2.000)

De Sablet T, Chassard C, Bernalier-Donadille A, Vareille M, Gobert AP, Martin C. 2009. Human microbiota-secreted factors inhibit shiga toxin synthesis by enterohemorrhagic Escherichia coli O157:H7. Infection and Immunity. 77(2):783-790. (IF 4.205)

Esbelin, J., C. Martin, E. Forano and P. Mosoni (2009). Differential translocation of green fluorescent protein fused to signal sequences of Ruminococcus albus cellulases by the Tat and Sec pathways of Escherichia coli. FEMS Microbiology Letters 294(2):239-244. (IF 2.199)

Desvaux, M, Hébraud M, Talon R, Henderson IR. 2009. Outer membrane translocation: numerical protein secretion nomenclature in question in mycobacteria. Trends in Microbiology. 17(8):338-340. (IF 6.894)

Desvaux M, Hébraud M, Talon R, Henderson IR. 2009. Secretion and subcellular localizations of bacterial proteins: a semantic awareness issue. Trends in Microbiology. 17(4):139-145. (IF 6.894)

Dumas E, Desvaux M, Chambon C, Hébraud M. 2009. Insight into the core and variant exoproteomes of Listeria monocytogenes species by comparative subproteomic analysis. Proteomics. 9(11):3136-3155. (IF 4.426)

Dumas E, Meunier B, Berdagué JL, Chambon C, Desvaux M, Hébraud M. 2009. The origin of Listeria monocytogenes 4b isolates is signified by subproteomic profiling. Biochimica Et Biophysica Acta-Proteins and Proteomics. 1794(10):1530-1536. (IF 2.480)

Esbelin J, Martin C, Forano E, Mosoni P. 2009. Differential translocation of green fluorescent protein fused to signal sequences of Ruminococcus albus cellulases by the Tat and Sec pathways of Escherichia coli. FEMS Microbiology Letters. 294(2):239-244. (IF 2.021)

Girardeau, J-P., Y. Bertin and C. Martin (2009). Genomic analysis of the Pai I-Cl3 locus in pathogenic Lee-Negative shiga toxin-producing Escherichia coli and Citrobacter rodentium. Microbiology-Sgm 155:1016-1027. (IF 3.025)

Leroy S, Lebert I, Chacornac JP, Chavant P, Bernardi T, Talon R. 2009. Genetic diversity and biofilm formation of Staphylococcus equorum isolated from naturally fermented sausages and their manufacturing environment. International Journal of Food Microbiology. 134(1-2):46-51. (IF 3.011)

Marquet P, Duncan SH, Chassard C, Bernalier-Donadille A, Flint HJ. 2009. Lactate has the potential to promote hydrogen sulphide formation in the human colon. FEMS Microbiology Letters. 299(2):128-134. (IF 2.021)

Mansour S, Bailly J, Landaud S, Monnet C, Sarthou AS, Cocaign-Bousquet M, Leroy S, Irlinger F, Bonnarme P. 2009. Investigation of associations of Yarrowia lipolytica, Staphylococcus xylosus, and Lactococcus lactis in culture as a first step in microbial interaction analysis. Applied and Environmental Microbiology. 75(20):6422-6430. (IF 3.686)

Nouaille R, Matulova M, Patoprsty V, Delort AM, Forano E. 2009. Production of oligosaccharides and cellobionic acid by Fibrobacter succinogenes S85 growing on sugars, cellulose and wheat straw. Applied Microbiology and Biotechnology. 83(3):425-433. (IF 2.569)

Planchon S, Desvaux M, Chafsey I, Chambon C, Leroy S, Hébraud M, Talon R. 2009. Comparative subproteome analyses of planktonic and sessile Staphylococcus xylosus C2a: new insight in cell physiology of a coagulase-negative Staphylococcus in biofilm. Journal of Proteome Research. 8(4):1797-1809. (IF 5.132)

Rakotoarivonina H, Terrie C, Chambon C, Forano E, Mosoni P. 2009. Proteomic identification of CBM37-containing cellulases produced by the rumen cellulolytic bacterium Ruminococcus albus 20 and their putative involvement in bacterial adhesion to cellulose. Archives of Microbiology. 191(4):379-388. (IF 1.975)

2008

Bendali F, Gaillard-Martinie B, Hébraud M, Sadoun D. 2008. Kinetic of production and mode of action of the Lactobacillus paracasei subsp paracasei anti-listerial bacteriocin, an algerian isolate. LWT-Food Science and Technology. 41(10):1784-1792. (IF 1.887)

Chassard C, Delmas E, Lawson PA, Bernalier-Donadille A. 2008 Bacteroides xylanisolvens sp nov., a xylan-degrading bacterium isolated from human faeces. International Journal of Systematic and Evolutionary Microbiology. 58:1008-1013. (IF 2.222)

Chassard C, Scott KP, Marquet P, Martin JC, Del'homme C, Dapoigny M, Flint HJ, Bernalier-Donadille A. 2008. Assessment of metabolic diversity within the intestinal microbiota from healthy humans using combined molecular and cultural approaches. FEMS Microbiology Ecology. 66(3):496-504. (IF 3.335)

Chaucheyras-Durand F, Walker ND, Bach A. 2008. Effects of active dry yeasts on the rumen microbial ecosystem: past, present and future. Animal Feed Science and Technology. 145(1-4):5-26. (IF 1.882)

Demigné C, Jacobs H, Moundras C, Davicco MJ, Horcajada MN, Bernalier A, Coxam V. 2008. Comparison of native or reformulated chicory fructans, or non-purified chicory, on rat cecal fermentation and mineral metabolism. European Journal of Nutrition. 47(7):366-374. (IF 1.899)

De Luna MD, Scott-Tucker A, Desvaux M, Ferguson P, Morin NP, Dudley EG, Turner S, Nataro JP, Owen P, Henderson IR. 2008. The Escherichia coli biofilm-promoting protein antigen 43 does not contribute to intestinal colonization. FEMS Microbiology Letters. 284(2):237-246. (IF 2.021)

Delmas J, Chacornac JP, Robin F, Giammarinaro P, Talon R, Bonnet R. 2008. Evaluation of the Vitek 2 system with a variety of Staphylococcus species. Journal of Clinical Microbiology. 46(1):311-313. (IF 3.945)

De Sablet T, Bertin Y, Vareille M, Girardeau JP, Garrivier A, Gobert AP, Martin C. 2008. Differential expression of stx2 variants in Shiga toxin-producing Escherichia coli belonging to seropathotypes A and C. Microbiology. Jan;154:176-86. (IF 2.841)

Dordet-Frisoni E, Gaillard-Martinie B, Talon R, Leroy S. 2008. Surface migration of Staphylococcus xylosus on low-agar media. Research in Microbiology. 159(4):263-269. (IF 2.055)

Dumas E, Meunier B, Berdagué L, Chambon C, Desvaux M, Hébraud M. 2008. Comparative analysis of extracellular and intracellular proteomes of Listeria monocytogenes strains reveals a correlation between protein expression and serovar. Applied and Environmental Microbiology. 74(23):7399-7409. (IF 3.801)

Fadda S, Chambon C, Champomier-Vergès MC, Talon R, Vignolo G. 2008. Lactobacillus role during conditioning of refrigerated and vacuum-packaged Argentinean meat. Meat Science. 79(3):603-610. (IF 2.183)

Forano E, Delort AM, Matulova M. 2008. Carbohydrate metabolism in Fibrobacter succinogenes S85: what NMR tells us? Microbial Ecology in Health and Disease. 20:1-9. IF

Gobert AP, Coste A, Guzman CA, Vareille M, Hindre T, De Sablet T, Girardeau JP and Martin C. 2008. Modulation of chemokine gene expression by shiga-toxin producing Escherichia coli belonging to various origins and serotypes. Microbes and Infection 10(2):159-165. (IF 2.801)

Guilbaud M, Chafsey I, Pilet MF, Leroi F, Prevost H, Hébraud M, Dousset X. 2008. Response of Listeria monocytogenes to liquid smoke. Journal of Applied Microbiology. 104(6):1744-1753. (IF 2.028)

Latorre-Moratalla ML, Veciana-Nogues T, Bover-Cid S, Garriga M, Aymerich T, Zanardi E, Ianieri A, Fraqueza MJ, Patarata L, Drosinos EH, Laukova A, Talon R, Vidal-Carou MC. 2008. Biogenic amines in traditional fermented sausages produced in selected european countries. Food Chemistry. 107(2):912-921. (IF 2.696)

Matulova M, Nouaille R, Capek P, Pean M, Delort AM, Forano E. 2008. NMR study of cellulose and wheat straw degradation by Ruminococcus albus 20. FEBS Journal. 275(13):3503-3511. (IF 3.139)

Poirier K, Faucher SP, Beland M, Brousseau R, Gannon V, Martin C, Harel J and Daigle F. 2008. Escherichia coli O157:H7 survives within human macrophages: global gene expression profile and involvement of the shiga toxins. Infection and Immunity 76(11):4814-4822. (IF 3.987)

Pradel N, Bertin Y, Martin C and Livrelli V. 2008. Molecular analysis of shiga toxin-producing Escherichia coli strains isolated from hemolytic-uremic syndrome patients and dairy samples in France. Applied and Environmental Microbiology 74(7):2118-2128. (IF 3.801)

Talon R, Leroy S, Lebert I, Giammarinaro P, Chacornac JP, Latorre-Moratalla M, Vidal-Carou C, Zanardi E, Conter M, Lebecque A. 2008. Safety improvement and preservation of typical sensory qualities of traditional dry fermented sausages using autochthonous starter cultures. International Journal of Food Microbiology. 126(1-2):227-234. (IF 2.753)

Vareille, M, Rannou F, Thelier N, Glasser AL, De Sablet T, Martin C and Gobert AP. 2008. Heme oxygenase-1 is a critical regulator of nitric oxide production in enterohemorrhagic Escherichia coli-infected human enterocytes. Journal of Immunology 180(8):5720-5726. (IF 6.000)

2007

Bore E, Hébraud M, Chafsey C, Chambon C, Skjaeret C, Moen B, Moretro T, Langsrud O, Rudi K, Langsrud S. 2007. Adapted tolerance to benzalkonium chloride in Escherichia coli K-12 studied by transcriptome and proteome analyses. Microbiology-Sgm. 153(4):935-946. (IF 2.841)

Chavant P, Gaillard-Martinie B, Talon R, Hébraud M, Bernardi T. 2007. A new device for rapid evaluation of biofilm formation potential by bacteria. Journal of Microbiological Methods. 68(3):605-612. (IF 2.000)

Chassard C, Goumy V, Leclerc M, Del'homme C, Bernalier-Donadille A. 2007. Characterization of the xylan-degrading microbial community from human faeces. FEMS Microbiology Ecology. 61(1):121-131. (IF 3.335)

Corbière Morot-Bizot S, Leroy S, Talon R. 2007. Monitoring of staphylococcal starters in two french processing plants manufacturing dry fermented sausages. Journal of Applied Microbiology. 102(1):238-244. (IF 2.501)

Desvaux M, Scott-Tucker A, Turner SM, Cooper LM, Huber D, Nataro JP, Henderson IR. 2007. A conserved extended signal peptide region directs posttranslational protein translocation via a novel mechanism. Microbiology-Sgm. 153:59-70. (IF 2.841)

Dordet-Frisoni E, Talon R, Leroy S. 2007. Physical and genetic map of the Staphylococcus xylosus C2a chromosome. FEMS Microbiology Letters. 266(2):184-193. (IF 2.274)

Dordet-Frisoni E, Dorchies G, De Araujo C, Talon R, Leroy S. 2007. Genomic diversity in Staphylococcus xylosus. Applied and Environmental Microbiology. 73(22):7199-7209. (IF 4.004)

Fonty G, Joblin K, Chavarot M, Roux R, Naylor G, Michallon F. 2007. Establishment and development of ruminal hydrogenotrophs in methanogen-free lambs. Applied and Environmental Microbiology. 73(20):6391-6403. (IF 3.801)

Gobert AP, Vareille M, Glasser AL, Hindre T, De Sablet T and Martin C. 2007. Shiga toxin produced by enterohemorrhagic Escherichia coli inhibits PI3k/Nf-Kappa B signaling pathway in globotriaosylceramide-3-negative human intestinal epithelial cells. Journal of Immunology 178(12): 8168-8174. (IF 6.068)

Gori K, Hébraud M, Chambon C, Mortensen HD, Arneborg N, Jespersen L. 2007. Proteomic changes in Debaryomyces hansenii upon exposure to NaCl stress. FEMS Yeast Research. 7(2):293-303. (IF 2.579)

Lebert I, Leroy S, Talon R. 2007. Effect of industrial and natural blocides on spoilage, pathogenic and technological strains grown in biofilm. Food Microbiology. 24(3):281-287. (IF 2.847)

Lebert I, Leroy S, Giammarinaro P, Lebert A, Chacornac JP, Bover-Cid S, Vidal-Carou MC, Talon R. 2007. Diversity of microorganisms in the environment and dry fermented sausages of small traditional french processing units. Meat Science. 76(1):112-122. (IF 2.183)

Lebert I, Nicolas C, Portanguen S, Lebert A. 2007. Combined water transfer and bacterial models to predict Listeria innocua growth on the surface of gelatine gel during the drying process. Journal of Food Engineering. 78(4):1371-1381. (IF 2.081)

Meunier B, Dumas E, Piec I, Bechet D, Hébraud M, Hocquette JF. 2007. Assessment of hierarchical clustering methodologies for proteomic data mining. Journal of Proteome Research. 6(1):358-366. (IF 5.684)

Mosoni P, Chaucheyras-Durand F, Béra-Maillet C, Forano E. 2007. Quantification by real-time PCR of cellulolytic bacteria in the rumen of sheep after supplementation of a forage diet with readily fermentable carbohydrates: effect of a yeast additive. Journal of Applied Microbiology. 103(6):2676-2685. (IF 2.028)

Planchon S, Chambon C, Desvaux M, Chafsey I, Leroy S, Talon R, Hébraud M. 2007. Proteomic analysis of cell envelope from Staphylococcus xylosus C2a, a coagulase-negative Staphylococcus. Journal of Proteome Research. 6(9):3566-3580. (IF 5.684)

Planchon S, Gaillard-Martinie B, Leroy S, Bellon-Fontaine MN, Fadda S, Talon R. 2007. Surface properties and behaviour on abiotic surfaces of Staphylococcus carnosus, a genetically homogeneous species. Food Microbiology. 24(1):44-51. (IF 2.039)

Robert C, Chassard C, Lawson PA, Bernalier-Donadille A. 2007. Bacteroides cellulosilyticus sp nov., a cellulolytic bacterium from the human gut microbial community. International Journal of Systematic and Evolutionary Microbiology. 57:1516-1520. (IF 2.222)

Talon R, Leroy S, Lebert I. 2007. Microbial ecosystems of traditional fermented meat products: the importance of indigenous starters. Meat Science. 77(1):55-62. (IF 2.183)

Talon R, Lebert I, Lebert A, Leroy S, Garriga M, Aymerich T, Drosinos EH, Zanardi E, Ianieri A, Fraqueza MJ, Patarata L, Laukova A. 2007. Traditional dry fermented sausages produced in small-scale processing units in Mediterranean countries and Slovakia. 1: microbial ecosystems of processing environments. Meat Science. 77(4):570-579. (IF 2.183)

Tessier MC, Graveline R, Crost C, Desabrais JA, Martin C, Drolet M and Harel J. 2007. Effects of DNA supercoiling and topoisomerases on the expression of genes coding for F165(1), a P-like fimbriae. FEMS Microbiology Letters 277(1):28-36. IF 2.274)

Vareille, M, De Sablet T, Hindre T, Martin C and Gobert AP. 2007. Nitric oxide inhibits Shiga-toxin synthesis by enterohemorrhagic Escherichia coli. Proceedings of the National Academy of Sciences of the United States of America 104(24):10199-10204. (IF 9.598)

Zuliani V, Lebert I, Augustin JC, Garry P, Vendeuvre JL, Lebert A. 2007. Modelling the behaviour of Listeria monocytogenes in ground and pork as a function of pH, water activity, nature and concentration of organic acid salts. Journal of Applied Microbiology. 103(3):536-550. (IF 2.028)

Livres ou chapîtres de livre

2012

Chaucheyras-Durand F, Chevaux E, Martin C, Forano E. 2012. Use of yeast probiotics in Ruminants: effects and mechanisms of action on rumen pH, fibre degradation, and microbiota according to the diet. In Probiotics/Book1, Intech Ed, pp 119-152

2011
Chaturvedi R, de Sablet T, Coburn LA, Gobert AP and Wilson KT. Arginine and polyamines in Helicobacter pylori-induced immune dysregulation and gastric carcinogenesis. Amino Acids 2011, accepté pour publication. FI: 4.132.
Gobert AP, Chaturvedi R and Wilson KT. Chap. 26 : Methods to evaluate alterations in polyamine metabolism caused by Helicobacter pylori infection. Dans Polyamines, édité par Pegg AE et Casero RA Jr. Humana Press, Totowa, NJ. Methods Mol. Biol. 2011, 720: 409-425.
Talon, R., I. Lebert, S. Leroy, M. Garriga, T. Aymerich, E. H. Drosinos, E. Zanardi, A. Ianieri, M. J. Fraqueza, L. Patarata and A. Laukova (2011). Microbial ecosystem of traditional dry fermented sausages in Mediterranean countries and Slovakia, NOVA Publisher.

2010
Bernalier-Donadille A. (2010). Fermentative metabolism by the human gut microbiota. Gastroenterol. Clin. Biol., 34:17-23.
Talon R, Lebert I, Leroy S, Garriga M, Aymerich T, Drosinos EH, Zanardi E, Ianieri A, Fraqueza MJ, Patarata L, Laukova A. 2010. Microbial Ecosystem of Traditional Dry Fermented Sausages in Mediterranean Countries and Slovakia In: Mediterranean Ecosystems: Dynamics, Management and Conservation. NOVA Publisher. Editors: Gina S. Williams. Series: Earth Sciences in the 21st Century, Environmental Science, Engineering and Technology. ISBN: 978-1-61209-146-4

2009
Desvaux M and Hébraud M. 2009. Chapter 15: Listeria monocytogenes. In: Bacterial secreted proteins. Ed: K. Wooldridge. Horizon Scientific Press, Norwich, UK. In press.
Leroy S, Planchon S, Talon R. 2009. Physiologie de la croissance en biofilm. In: Staphylococcus aureus, Eds Y. Le Loir et M. Gautier, Tec&Doc Lavoisier. Chapitre 2, pp. 135-156.

2008
Bernalier-Donadille A and Doré J. 2008.Structure etfonctions métaboliques du microbiote gastro-intestinal de l’Homme. In « Aliments fonctionnels, 2nd edition», ed. M. Roberfroid, V. Coxam, N. Delzenne, Lavoisier, Collection « Sciences et Techniques Agro-alimentaires », Paris, 429-454.
Desvaux M and Hébraud M. 2008. Chapter 12: Analysis of cell envelope proteins. (from the cover) In: Handbook of Listeria monocytogenes. Ed: D. Liu. CRC Press, Taylor and Francis Group, Boca Raton, Florida, USA. pp. 359-393.

2007
Champomier-Vergès M, Crutz-Le Coq AM, Zagorec M, Leroy S, Dordet-Frisoni E, Planchon S, Talon R. 2007. Genetics of microbial starters. In: Handbook of Fermented Meat and Poultry. Eds: F. Toldra, Wai-Kit Nip, J. G. Sebranek, L. H. Stahnke, Expedito- Tadeu F. Silveira and R. Talon (the Associate Editor) and Y.H. Hui (Administrative Editor). Chapter 17, pp. 177-186.
Lebert I, Leroy S, Talon R. 2007. Microorganisms in traditional fermented meats. In: Handbook of Fermented Meat and Poultry. Eds: F. Toldra, Wai-Kit Nip, J. G. Sebranek, L. H. Stahnke, Expedito- Tadeu F. Silveira and R. Talon (the Associate Editor) and Y.H. Hui (Administrative Editor). Chapter 11, 113-124.
Fonty G et Chaucheyras-Durand F. 2007. Les écosystèmes digestifs. Collection Monographies de Microbiologie, Editions Lavoisier (Tec & Doc), 311p.
Gérard Pand Bernalier-Donadille A. 2007. Les fonctions majeures du microbiote intestinal. Cahiers de Nutrition et de Diététique, Numéro spécial, 42, 2S28-2S36.

Contrats
· Contrat de recherche avec la Société Lallemand (2010-2013) : Effets et modes d’action de probiotiques au sein du tube digestif animal.
· FUI, 2011-2014. Fibres fonctionnelles innovantes par leurs bénéfices santés et leurs propriétés techniques améliorées : du concept au produit fini savoureux et attractif pour le consommateur (Mimosa).
· ANR 2012-2015. ALID. Valorisation durable du babeurre : bénéfices nutritionnels, intérêt fonctionnel dans les aliments, perception par le consommateur (Valobab)
· Contrat de recherche avec la Société Beghin Meiji (2009-2010)
· Contrat Qualiment avec la Société Cosucra (2010-2011)
· Contrat de recherche avec la Société Agro Biotech Accélérateur (A.B.A.) (2010-2011)
· Action incitative MICA-CEPIA 2010-2012. Mécanismes moléculaires impliqués dans l’Interaction bactérie/cellule musculaire : Impact sur la structure des fibres musculaires (MICEL).
· FUI. 2011-2014. Bioprotection des Laits crus contre les ShigaToxines d’Eschericha coli (BLASTEC)
· ANR 2010-2013. ALIA. Description et évolution de l’écosystème microbien des produits carnés et de la mer par pyroséquencage. Influence des cultures bioprotectrices (ECOBIOPRO)
· EU. 7ème PCRD. KBBE-2009-2-3-02. Sharing Food. African food tradition revisited by research (AFTER).
· ANR. 2008-2012. ALIA. Stratégie Non AntiBiotique Anti-Bactéries pathogènes: exploration des capacités inhibitrices des écosystèmes naturels contre les contaminations à S. aureus en contexte laitier (NABAB).
· EU, 6ème PCRDT, 2007-2012. Improving the safety of beef and beef products for the consumer in production and processing (ProSafeBeef).
· Projet ADIV, région Rhône Alpes 2008-2010. Mise en œuvre de méthodes et de molécules pour les procédés de désinfection des ateliers agroalimentaires – Conséquences sur l’adhésion et la survie de Listeria en biofilms.
· ANR. 2006-2008. PNRA. Compréhension du fonctionnement d’espèces microbiennes cibles dans des matrices alimentaires et origine de leur diversité génétique (Genoferment).
· ANR 2006-2008. PNRA. Analyse de la supériorité écologique, conférée par l’acido-résistance, à des Escherichia coli producteurs de Shiga-toxines (STEC), de la fourche à la fourchette.
· ANR 2006-2008. PNRA. Les staphylocoques à coagulase négative dans les fromages, les salaisons et les ateliers de fabrication : Evaluation de la biodiversité et des risques sanitaires (SCN/BEER).
· Contrat de développement technologique. 2007-2008. Ecologie microbienne du chorizo Français.
· PRA-INRA 2005-2007. Analyse et réduction du risque alimentaire à Listeria monocytogenes. Partenaires : 13 laboratoires français dont 9 INRA ou associés INRA.

Rédaction : S. Dutilloy
Date de création : 07 Février 2012
Mise à jour : 13 Février 2014